This page is the online home for the paper ‘Genomic epidemiology of artemisinin resistant malaria’ by the MalariaGEN P. falciparum Community Project, and provides links to data resources and citation information.
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Data Resources
Supplementary data
- Supplementary file 1 (xlsx, 814kb) – For each P. falciparum gene, this table lists: the systematic ID, position and description of the gene; the ortholog gene in P. chabaudi; the conservation score; the count of all (N)on-synonymous and (S)ynonymous mutation in Africa (AFR) and Southeast Asia (SEA); the count of the rare (i.e. present in only 1 or 2 samples) mutations; the N/S log fold-change in SEA vs AFR; the Fisher’s test p-value of N/S in AFR vs SEA.
Sample data
- P. falciparum Community Project Jan. 2016 data release – This release contains sample information, accession numbers and genotype calls for 3,411 samples from 23 countries.
P. falciparum Community Project web application
Catalogue of genetic variations (SNPs) and allele frequencies
- Catalogue of genetic variations (SNPs) and allele frequencies v4.0 – Download latest version of the catalogue with more than 900,000 SNPs and allele frequency data based on an analysis of 3,488 samples from 43 locations in 23 countries.
About the collaboration
The sequence data used in this analysis were generated by the Wellcome Trust Sanger Institute and contributed to the MalariaGEN P. falciparum Community Project by several independent research groups. These data form part of ongoing projects that are investigating a number of scientific questions that go beyond the scope of this particular publication. Some of the intended scientific analyses will be published through the MalariaGEN P. falciparum Community Project which includes all of the samples and data listed here, and other intended analyses will be published through the Pf3k Project which includes a large subset of the samples and data.